CytoSEED: a Cytoscape Plugin for Viewing, Manipulating and Analyzing Metabolic Models Created by the Model SEED

Authors

Matthew DeJongh, Hope CollegeFollow
Benjamin Bockstege, University of Notre DameFollow
Paul Frybarger, University of ChicagoFollow
Nicholas Hazekamp, Hope CollegeFollow
Joshua Kammeraad, Hope CollegeFollow
Travis McGeehan, Hope CollegeFollow

Document Type

Article

Publication Date

12-30-2011

Publication Source

Bioinformatics

Publisher

Oxford University Press

ISSN

1367-4803

Abstract

CytoSEED is a Cytoscape plugin for viewing, manipulating and analyzing metabolic models created using the Model SEED. The CytoSEED plugin enables users of the Model SEED to create informative visualizations of the reaction networks generated for their organisms of interest. These visualizations are useful for understanding organism-specific biochemistry and for highlighting the results of flux variability analysis experiments.

Keywords

Bioinformatics, SystemsBiology, Metabolic Modeling

Recommended Citation

Published in: Bioinformatics, December 30, 2011. Copyright © 2011 Oxford University Press, Oxford, England. The final published version is available at: http://bioinformatics.oxfordjournals.org/cgi/content/abstract/btr719?ijkey=uXAfKiw7eswz6zz&keytype=ref