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Submissions from 2015

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Effects of different wavelengths of light on the biology, behavior, and production of grow-out Pekin ducks, C. L. Campbell, S. Colton, R. Haas, M. Rice, A. Porter, A. Schenk, A. Meelker, Susan M. Fraley, and Gregory S. Fraley

Cautions About The Reliability Of Pairwise Gene Correlations Based On Expression Data, Scott Powers, Matt DeJongh, Aaron A. Best, and Nathan L. Tintle

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Encouraging Greater Student Inquiry Engagement in Science Through Motivational Support by Online Scientist-Mentors, Stephen C. Scogin and Carol L. Stuessy

Submissions from 2014

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Molecular Systematics And Biogeography Of Wisteria Inferred From Nucleotide Sequences Of Nuclear And Plastid Genes, Jianhua Li, Jin-Huo Jiang, Cheng-Xin Fu, and Shao-Qing Tang

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Phylogenetics and Biogeography of Apios (Fabaceae) Inferred from Sequences of Nuclear and Plastid Genes, Jianhua Li, Jinhuo Jiang, Holly Vander Stel, Austin Homkes, Jeffrey Corajod, Kenneth Brown, and Zhiduan Chen

Submissions from 2013

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Automated Genome Annotation And Metabolic Model Reconstruction In The SEED And Model SEED, Scott Devoid, Ross Overbeek, Matthew DeJongh, Veronika Vonstein, Aaron A. Best, and Christopher Henry

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Diversification Of The Phaseoloid Legumes: Effects Of Climate Change, Range Expansion And Habit Shift, Honglei Li, Wei Wang, Li Lin, Xiangyun Zhu, Jianhua Li, Xinyu Zhu, and Zhiduan Chen

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Phylogenetics And Biogeography Of Theaceae Based On Sequences Of Plastid Genes, Mi-Mi Li, Jian-Hua Li, Peter Del Tredici, Jeffrey Corajod, and Cheng-Xin Fu

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Cluster J Mycobacteriophages: Intron Splicing in Capsid and Tail Genes, Welkin H. Pope, Deborah Jacobs-Sera, Aaron A. Best, Gregory W. Broussard, Pamela L. Connerly, Rebekah M. Dedrick, Timothy A. Kremer, Susan Offner, Amenawon H. Ogiefo, Marie C. Pizzorno, Kate Rochenbach, Daniel A. Russell, Emily L. Stowe, Joseph Stukey, Sarah A. Thibault, James F. Conway, Roger W. Hendrix, and Graham F. Hatfull

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Affinity And Kinetic Modulation Of Polyamide–DNA Interactions By N-modification Of The Heterocycles, Joseph P. Ramos, Balaji Babu, Sameer Chavda, Yang Liu, Adam Plaunt, Amanda Ferguson, Mia Savagian, Megan Lee, Samuel Tzou, Shicai Lin, Konstantinos Kiakos, Shuo Wang, Moses Lee, John A. Hartley, and W. David Wilson

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Genomic Reconstruction Of Transcriptional Regulatory Networks In Lactic Acid Bacteria, Dmitri A. Ravcheev, Aaron A. Best, Natalia V. Sernova, Marat D. Kazanov, Pavel S. Novichkov, and Dmitri A. Rodionov

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Comparative Genomics And Functional Analysis Of Rhamnose Catabolic Pathways And Regulons In Bacteria, Irina A. Rodionova, Xiaoqing Li, Vera Thiel, Sergey Stolyar, Krista Stanton, James K. Fredrickson, Donald A. Bryant, Andrei L. Osterman, Aaron A. Best, and Dmitry A. Rodionov

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Conformational Modulation Of Dna By Polyamide Binding: Structural Effects Of f-Im-Py-Im Based Derivatives On 5'-ACGCGT-3', Shuo Wang, Yun Chai, Balaji Babu, Vijay Satam, Moses Lee, and W. David Wilson

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Authentic Assessment Using Biology Lab Practicals, Kathy A. Winnett-Murray and Lori H. Hertel

Submissions from 2012

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Endogenous angiotensin II and the regulation of oxygen consumption and colonic temperature in rats, Christopher C. Barney, Kacie Greenheck, Matthew A. Nehs, and Lisa N. Hardy

Nearctic Species of the New Genus 'Tigrosa' (Araneae: Lycosidae), Allen R. Brady

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Influence of fungal isolates infecting tall fescue on multitrophic interactions, Thomas L. Bultman, Adilene Aguilera, and Terrencel Sullivan

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Development of Microsatellite Markers for the Dove Tree, Davidia Involucrata (Nyssaceae), a Rare Endemic From China, Yu-juan Du, Qiong-yan Dai, Lu-yi Zhang, Ying-xiong Qiu, Jian-hua Li, and Cheng-xin Fu

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VACM-1/cul5 Expression in Vascular Tissue in Vivo is Induced by Water Deprivation and its Expression in Vitro Regulates Aquaporin-1 Concentrations, Alyssa E. Johnson, Isabelle P. Le, Bradley T. Andresen, Joseph Stodola, Gary L. Dewey, Shirley B. Dean, James Resau, Pete Haak, Travis Ruch, Ashleigh Sartor, Inara Lazdins, Christopher C. Barney, and Maria Burnatowska Hledin

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Distinctiveness-based stereotype threat and the moderating role of coaction contexts, Jong-Eun Roselyn Lee and Clifford Nass

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Aquaporin-2 Levels in vitro and in vivo are Regulated by VACM-1, a Cul 5 Gene, Isabelle P. Le, Sarah Schultz, Bradley T. Andresen, Gary L. Dewey, Ping Zhao, Laura Listenberger, Peter M. Deen, Abby Buchwalter, Christopher C. Barney, and Maria Burnatowska-Hledin

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Phylogenetics and Diversification of Syringa Inferred from Nuclear and Plastid DNA Sequences, Jianhua Li, Benjamin Goldman-Huertas, Jeffrey DeYoung, and John Alexander

Generic limits of Pyrinae: Insights from nuclear ribosomal DNA sequences, Qing-Yan Li, Wei Guo, Wen-Bo Liao, James A. Macklin, and Jian-Hua Li

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Improving Journal Club: Increasing Student Discussion and Understanding of Primary Literature in Molecular Biology Through the Use of Dialectical Notes, Virginia McDonough-Stukey

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Diversity and Versatility of the Thermotoga maritima Sugar Kinome, Irina A. Rodionova, Chen Yang, Xiaoqing Li, Oleg V. Kurnasov, Aaron A. Best, Andrei L. Osterman, and Dmitry A. Rodionov

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Evaluating the Consistency of Gene Sets Used in the Analysis of Bacterial Gene Expression Data, Nathan L. Tintle, Alexandra Sitarik, Benjamin Boerema, Kylie Young, Aaron Best, and Matthew DeJongh

Submissions from 2011

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Expanding the Diversity of Mycobacteriophages: Insights into Genome Architecture and Evolution, Amanda Barber, Aaron A. Best, Rebekah Chew, Jeffrey Corajod, Anne Georges, Catherine Harmon, Erin Hildebrandt, Erica Jansen, Justin Knutter, Jennifer LaRoche, Courtney Long, Caitlin Peirce, Luke Peterson, Andrew Rose, Dale Schipper, Jessica Simmons, Robert Sjoholm, Ingrid Slette, Joseph Stukey, and Angelica Willis

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Restrained Rats and the Observer Effect in Physiology, Christopher C. Barney

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Connecting genotype to phenotype in the era of high-throughput sequencing, Aaron A. Best and Matthew DeJongh

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Do Botanophila flies provide reproductive isolation between two species of Epichloe fungi? A field test, Thomas L. Bultman, Adrian Leuchtmann, T. J. Sullivan, and Austin P. Dreyer

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Synthesis and antiprotozoal activity of 1,2,3,4-tetrahydro-2-thioxopyrimidine analogs of combretastatin A-4, Dereje Desta, Robert Sjoholm, Lauren Lee, Megan Lee, Kristin Dittenhafer, Sarah Canche, Balaji Babu, Sameer Chavda, Christie Dewar, Stephanie Yanow, Aaron A. Best, and Moses Lee

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Incidental Oligotrophication of North American Great Lakes, Mary Anne Evans, Gary Fahnenstiel, and Donald Scavia

Integrating Undergraduate Research into Faculty Responsibilities: The Impact on Tenure and Promotion, Lorna Hernandez Jarvis, John Shaughnessy, Leah A. Chase, and Christopher C. Barney

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Politics and the Order of Love: An Augustinian Ethic of Democratic Citizenship, Kristen Deede Johnson and Jeffrey Skaff

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'Whose Second Life Is This?' How Avatar-Based Racial Cues Shape Ethno-Racial Minorities' Perception of Virtual Worlds, Jong-Eun Roselyn Lee and Sung Gwan Park

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A novel class of trans-methylpyrazoline analogs of combretastatins: Synthesis and in-vitro biological testing, Megan Lee, Olivia Brockway, Armaan Dandavati, Samuel Tzou, Robert Sjoholm, Vijay Satam, Cara Westbrook, Susan L. Mooberry, Matthias Zeller, Balaji Babu, and Moses Lee

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Mutational analysis of VACM-1/cul5 exons in cancer cell lines, Steven P. Lewis, Angelica N. Willis, Alyssa E. Johnson, James Resau, and Maria A. Burnatowska-Hledin

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Phylogenetic Evaluation of Series Delimitations in Section Palmata (Acer, Aceroideae, Sapindaceae) Based on Sequences of Nuclear and Chloroplast Genes, Jianhua Li

The Mycorrhizal System of Pterospora Andromedea (Pine-drops) in West Michigan Inferred from DNA Sequence Data, Jianhua Li

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Resveratrol enhances anti-proliferative effect of VACM-1/cul5 in T47D cancer cells, Justin Lubbers, Steven Lewis, Emily Harper, Michael P. Hledin, Gabriel A. Marquez, Alyssa E. Johnson, Danelle Graves, and Maria Burnatowska-Hledin

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Metastatic Progression of Prostate Cancer and E-Cadherin Regulation by Zeb1 and Src Family Kinases, Aaron P. Putzke, Aviva P. Ventura, Alexander M. Bailey, Canan Akture, John Okopu-Ansah, Muege Celiktas, Michael S. Hwang, Douglas S. Darling, Ilsa M. Coleman, Peter S. Nelson, Holly M. Nguyen, Eva Corey, Muneesh Tewari, Coim Morrissey, Robert L. Vessella, and Beatrice S. Knudsen

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Inference of the Transcriptional Regulatory Network in Staphylococcus aureus by Integration of Experimental and Genomics-Based Evidence, Dmitry A. Ravcheev, Aaron A. Best, Nathan Tintle, Matthew DeJongh, Andrei L. Osterman, Pavel S. Novichkov, and Dmitry A. Rodionov

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Exploring Animal Photoreceptors and Eyes: Tested Studies for Laboratory Teaching, Kathy A. Winnett-Murray and Lori H. Hertel

Submissions from 2010

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Phosphorylation of VACM-1/Cul5 by Protein Kinase A Regulates Its Neddylation and Antiproliferative Effect, Shirley E. Bradley, Alyssa E. Johnson, Isabelle P. Le, Elizabeth Oosterhouse, Michael P. Hledin, Gabriel A. Marquez, and Maria Burnatowska-Hledin

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High-throughput Generation, Optimization and Analysis of Genome-scale Metabolic Models, Christopher S. Henry, Matthew DeJongh, Aaron A. Best, Paul M. Frybarger, Ben Linsay, and Rick L. Stevens

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Host Preferences of Beechdrops (Epifagus): Evidence from Chloroplast DNA Sequence Data, Jianhua Li, Jeffrey Corajod, and Jeffrey DeYoung

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Sequences of 72 Plastid Genes Support the Early Divergence of Cornales in the Asterids, Jianhua Li and Zhi-Hong Zhang

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Repression of Wnt Signaling by a Fer-type Nonreceptor Tyrosine Kinase, Aaron P. Putzke and Joel H. Rothman

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A role for MGA2, but not SPT23, in activation of transcription of ERG1 in Saccharomyces cerevisiae, Caitlin Rice, Matthew Cooke, Natalie Treloar, Peter Vollbrecht, Joseph Stukey, and Virginia McDonough

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Using HPLC-Mass Spectrometry to Teach Proteomics Concepts with Problem-based Techniques, Michael Short, Anne Short, Rachel Vankempen, Michael Seymour, and Maria Burnatowska-Hledin

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Conflicting Phylogenies of Section Macrantha (Acer, Aceroideae, Sapindaceae) Based on Chloroplast and Nuclear DNA, Zhihong Zhang, Chunqi Li, and Jianhua Li

Submissions from 2009

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Influence of Genetic Variation in the Fungal Endophyte of a Grass on an Herbivore and its Parasitoid, Thomas L. Bultman, John L. Rodstrom, Kara R. Radabaugh, Joshua D. VanDop, James M. Librizzi, Leanna L. Longwell, Christina Pulas, LaShawn Grant, and Terrence J. Sullivan

Extensions to and Modulation of Defensive Mutualism in Grass Endophytes, Thomas L. Bultman, Terrence J. Sullivan, Michael H. Cortez, Timothy J. Pennings, and Janet L. Andersen

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Inclusion of A Priori Information in Genome-Wide Association Analysis, Nathan L. Tintle, Francesca Lantieri, Jeremie Lebrec, Melanie Sohns, David Ballard, and Heike Bickeboeller

Submissions from 2008

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The RAST Server: Rapid Annotations using Subsystems Technology, Ramy Aziz, Daniela Bartels, Aaron A. Best, Matthew DeJongh, Terrence Disz, Robert Edwards, Kevin Formsma, Svetlana Gerdes, Elizabeth Glass, Michael Kubal, Folker Meyer, Gary Olsen, Robert Olson, Andrei Osterman, Ross Overbeek, Leslie McNeil, Daniel Paarman, Tobias Paczian, Bruce Parello, Gordon Pusch, Claudia Reich, Rick Stevens, Olga Vassieva, Veronika Vonstein, Andreas Wilke, and Olga Zagnitko

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Gene Set Analyses For Interpreting Microarray Experiments On Prokaryotic Organisms, Nathan Tintle, Aaron A. Best, Matthew DeJongh, Dirk Van Bruggen, Fred Heffron, Steffen Porwollik, and Ronald C. Taylor

Submissions from 2007

Models of Interdisciplinary Research and Service Learning at Hope College, Aaron Best, Matthew DeJongh, Amanda Barton, Jeff R. Brown, and Christopher C. Barney

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Toward The Automated Generation Of Genome-scale Metabolic Networks In The SEED, Matthew DeJongh, Kevin Formsma, Paul Boillot, John Gould, Matthew Rycenga, and Aaron A. Best